SCI和EI收录∣中国化工学会会刊

中国化学工程学报 ›› 2025, Vol. 88 ›› Issue (12): 124-132.DOI: 10.1016/j.cjche.2025.06.034

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Genetic engineering and adaptive evolution of Saccharomyces cerevisiae for robust xylose uptake and ethanol production

Omama Rehman1, Jingfang Chen1, Quan Zhang2, Muzi Hu1, Cuihuan Sun3, Youduo Wu1, Huipeng Gao2, Muhammad Jawad4, Ayesha Shahid5, Chong Peng6, Chuang Xue1   

  1. 1. MOE Key Laboratory of Bio-Intelligent Manufacturing, Engineering Research Center of Application and Transformation for Synthetic Biology, School of Bioengineering, Dalian University of Technology, Dalian 116024, China;
    2. SINOPEC Dalian Research Institute of Petroleum and Petrochemicals Co., Ltd., Dalian 116041, China;
    3. Microbial Research Institute of Liaoning Province, Chaoyang 122000, China;
    4. C1 Refinery Engineering Research Center, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China;
    5. School of Chemical Engineering, Zhengzhou University, Zhengzhou 450001, China;
    6. School of Chemical Engineering, Dalian University of Technology, Dalian 116024, China
  • 收稿日期:2025-03-16 修回日期:2025-05-01 接受日期:2025-06-06 出版日期:2026-02-09 发布日期:2025-09-17
  • 通讯作者: Youduo Wu,E-mail:wuyouduo@dlut.edu.cn;Chuang Xue,E-mail:xue.1@dlut.edu.cn
  • 基金资助:
    This work was supported by the National Key Research and Development Program of China (2021YFC2101303), the National Natural Science Foundation of China (U22A20424 and 22378048), the Major scientific and technological projects of Sinopec, the Dalian Technology Talents Project for Distinguished Young Scholars (2021RJ03), the Fundamental Research Funds for the Central Universities (DUT25LAB104), the Liaoning Revitalization Talents Program (XLYC2202049), the Ningbo Natural Science Foundation (2022J013), the Ningbo Municipal Public Welfare Science and Technology Foundation (2024S004).

Genetic engineering and adaptive evolution of Saccharomyces cerevisiae for robust xylose uptake and ethanol production

Omama Rehman1, Jingfang Chen1, Quan Zhang2, Muzi Hu1, Cuihuan Sun3, Youduo Wu1, Huipeng Gao2, Muhammad Jawad4, Ayesha Shahid5, Chong Peng6, Chuang Xue1   

  1. 1. MOE Key Laboratory of Bio-Intelligent Manufacturing, Engineering Research Center of Application and Transformation for Synthetic Biology, School of Bioengineering, Dalian University of Technology, Dalian 116024, China;
    2. SINOPEC Dalian Research Institute of Petroleum and Petrochemicals Co., Ltd., Dalian 116041, China;
    3. Microbial Research Institute of Liaoning Province, Chaoyang 122000, China;
    4. C1 Refinery Engineering Research Center, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China;
    5. School of Chemical Engineering, Zhengzhou University, Zhengzhou 450001, China;
    6. School of Chemical Engineering, Dalian University of Technology, Dalian 116024, China
  • Received:2025-03-16 Revised:2025-05-01 Accepted:2025-06-06 Online:2026-02-09 Published:2025-09-17
  • Contact: Youduo Wu,E-mail:wuyouduo@dlut.edu.cn;Chuang Xue,E-mail:xue.1@dlut.edu.cn
  • Supported by:
    This work was supported by the National Key Research and Development Program of China (2021YFC2101303), the National Natural Science Foundation of China (U22A20424 and 22378048), the Major scientific and technological projects of Sinopec, the Dalian Technology Talents Project for Distinguished Young Scholars (2021RJ03), the Fundamental Research Funds for the Central Universities (DUT25LAB104), the Liaoning Revitalization Talents Program (XLYC2202049), the Ningbo Natural Science Foundation (2022J013), the Ningbo Municipal Public Welfare Science and Technology Foundation (2024S004).

摘要: Saccharomyces cerevisiae is not naturally capable of efficiently utilizing xylose as a carbon source. When cultured with lignocellulosic hydrolysates containing pretreatment-derived inhibitors, S. cerevisiae suffers from much lower sugar uptake, ethanol yield and fermentation efficiency. Thus, considering efficient xylose conversion into ethanol during non-detoxified hydrolysate culture, genetic engineering and adaptive evolution of S. cerevisiae might be a promising joint strategy for improving xylose uptake and ethanol production. In this study, an inhibitor-tolerant strain S. cerevisiae SPSC01-TAF94 was genetically engineered by overexpressing both xylose transport- and metabolism-related genes (N360F, Ru-xylA, TAL1, TKL1, RKI1 and RPE1), yielding the xylose-utilizing strain TAF94-X, followed by three-stage adaptation in non-detoxified corn stover hydrolysate containing 5 g·L-1 acetic acid, 0.32 g·L-1 furfural, 0.17 g·L-1 HMF and 0.19 g·L-1 vanillin as the major inhibitors as well as 20, 40 and 60 g·L-1 xylose adjusted as the major carbon source, respectively. Finally, an active xylose-utilizing and ethanol-producing strain TAF94-X60 was obtained, which achieved 44.9 g·L-1 ethanol with yield of 0.41 g·g-1, productivity of 0.62 g·L-1·h-1 and xylose consumption rate of 0.42 g·L-1·h-1 during hydrolysate culture, compared to those of 36.5 g·L-1, 0.38 g·g-1, 0.50 g·L-1·h-1 and 0.20 g·L-1·h-1 obtained with the control strain TAF94-X. The proposed joint strategy effectively utilizes hydrolyzed sugars while eliminating the need for conventional detoxification or water washing processes, thus enhancing the economic feasibility of large-scale lignocellulosic ethanol production.

关键词: Saccharomyces cerevisiae, Ethanol, Genetic engineering, Adaptive evolution, Xylose uptake, Lignocellulosic hydrolysate

Abstract: Saccharomyces cerevisiae is not naturally capable of efficiently utilizing xylose as a carbon source. When cultured with lignocellulosic hydrolysates containing pretreatment-derived inhibitors, S. cerevisiae suffers from much lower sugar uptake, ethanol yield and fermentation efficiency. Thus, considering efficient xylose conversion into ethanol during non-detoxified hydrolysate culture, genetic engineering and adaptive evolution of S. cerevisiae might be a promising joint strategy for improving xylose uptake and ethanol production. In this study, an inhibitor-tolerant strain S. cerevisiae SPSC01-TAF94 was genetically engineered by overexpressing both xylose transport- and metabolism-related genes (N360F, Ru-xylA, TAL1, TKL1, RKI1 and RPE1), yielding the xylose-utilizing strain TAF94-X, followed by three-stage adaptation in non-detoxified corn stover hydrolysate containing 5 g·L-1 acetic acid, 0.32 g·L-1 furfural, 0.17 g·L-1 HMF and 0.19 g·L-1 vanillin as the major inhibitors as well as 20, 40 and 60 g·L-1 xylose adjusted as the major carbon source, respectively. Finally, an active xylose-utilizing and ethanol-producing strain TAF94-X60 was obtained, which achieved 44.9 g·L-1 ethanol with yield of 0.41 g·g-1, productivity of 0.62 g·L-1·h-1 and xylose consumption rate of 0.42 g·L-1·h-1 during hydrolysate culture, compared to those of 36.5 g·L-1, 0.38 g·g-1, 0.50 g·L-1·h-1 and 0.20 g·L-1·h-1 obtained with the control strain TAF94-X. The proposed joint strategy effectively utilizes hydrolyzed sugars while eliminating the need for conventional detoxification or water washing processes, thus enhancing the economic feasibility of large-scale lignocellulosic ethanol production.

Key words: Saccharomyces cerevisiae, Ethanol, Genetic engineering, Adaptive evolution, Xylose uptake, Lignocellulosic hydrolysate